Color Average Interaction Strength
      0 < i.s. ≤ 1
      1 < i.s. ≤ 2
      2 < i.s. ≤ 3
      3 < i.s. ≤ 4
      4 < i.s. ≤ 5
      5 < i.s. ≤ 6
      6 < i.s. ≤ 7
      7 < i.s. ≤ 8
      8 < i.s. ≤ 9
      9 < i.s. ≤ 10
Index Hub Avg Force Num Of Links Community Value
1C:C:g502 20.9125410
2C:C:c503 23.2875410
3C:C:c504 15.684510
4C:C:c505 17.084510
5C:C:c506 18.1225410
6C:C:a507 13.7325410
7C:C:u508 10.7075810
8C:C:c509 21.5575410
9C:C:g510 15.9925410
10C:C:u511 18.235410
11C:C:c512 18.2175410
12C:C:u513 14.6783610
13C:C:a514 18.086510
14C:C:g515 13.86510
15C:C:g518 15.2017610
16C:C:g519 11.29510
17C:C:a521 19.2510
18C:C:g522 16.6510
19C:C:g523 20.62410
20C:C:a524 19.094510
21C:C:c525 19.868510
22C:C:g526 21.135410
23C:C:g528 19.9575410
24C:C:g529 23.0075410
25C:C:c531 20.7675410
26C:C:c534 8.1125820
27C:C:u535 19.022520
28C:C:c536 22.66420
29C:C:g540 22.205410
30C:C:c542 19.8625410
31C:C:g543 21.1475410
32C:C:a546 15.4329710
33C:C:c548 14.3467610
34C:C:g549 13.9475410
35C:C:g550 21.5075410
36C:C:g551 20.7525410
37C:C:g552 21.215410
38C:C:g553 22.3175410
39C:C:u555 18.14410
40C:C:g557 20.21510
41C:C:a558 14.38610
42C:C:u559 16.972510
43C:C:u560 15.164510
44C:C:c561 16.48410
45C:C:c562 17.145410
46C:C:c563 19.2075410
47C:C:c564 20.13410
48C:C:c565 20.72410
49C:C:u566 20.0125410
50C:C:g567 22.4675410
51C:C:g568 22.6975410
52C:C:g569 20.108510
53C:C:g570 24.275410
54C:C:u571 18.138510
55C:C:c572 14.2410
56C:C:a573 10.28410
57C:C:c574 8.17429710
58C:C:c575 14.5283610
59C:C:a576 14.15610
60A:A:R5 8.0175410
61A:A:I6 7.7475400
62A:A:P14 5.734500
63A:A:Y20 8.075490
64A:A:Y26 7.7645110
65A:A:W28 14.0675440
66A:A:R30 7.09254110
67A:A:R35 9.175400
68A:A:R39 8.4610
69A:A:E41 8.396510
70A:A:R47 10.5575410
71A:A:Y67 7.99560
72A:A:E69 9.856500
73A:A:Y80 7.8575400
74A:A:Q82 9.688510
75A:A:R85 9.0825410
76A:A:Y89 8.78610
77A:A:Y92 6.8085120
78A:A:W101 6.0175400
79A:A:Y103 8.965450
80A:A:R104 8.148500
81A:A:F106 11.6254130
82A:A:E107 8.426570
83A:A:Y122 11.8425470
84A:A:R125 9.44570
85A:A:R127 10.485450
86A:A:R147 10.46400
87A:A:T156 5.2375400
88A:A:R163 10.825400
89A:A:Y168 8.056510
90A:A:L179 4.365400
91A:A:D182 9.4075410
92A:A:Y187 14.684510
93A:A:N191 9.968510
94A:A:D194 11.9775410
95A:A:D195 11.6275410
96A:A:D202 9.794540
97A:A:R205 8.4610
98A:A:W209 14.886510
99A:A:H216 7.705410
100A:A:Y231 11.9333640
101A:A:H232 8.0575400
102A:A:N238 7.39833680
103A:A:T251 6.1425400
104A:A:Y256 6.3325400
105A:A:F261 6.815400
106A:A:N268 8.75500
107A:A:Y269 8.264140
108A:A:F289 7.97254100
109A:A:W295 13.8717640
110A:A:K309 6.6675400
111A:A:L310 7.04754140
112A:A:K332 9.09400
113A:A:F334 5.3875400
114A:A:L335 6.274170
115A:A:Y347 6.57530
116A:A:R358 8.83420
117A:A:F365 6.661676170
118A:A:R370 4.3675400
119A:A:Y371 7.9275420
120A:A:F373 5.68400
121A:A:E375 11.6275430
122A:A:Y398 7.3665180
123A:A:R417 6.6225420
124A:A:F419 7.4925400
125A:A:Q432 6.9075420
126A:A:R435 10.67520
127A:A:T444 7.465420
128A:A:?600 7.4691010

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Force: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

Value: this column reports the value present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      90 < rr ≤ 100
Index Node1 Node2 Recurrency Force Hub1? Hub2? Community Value1 Value2
1C:C:c572 C:C:u571 23.270230.81YesYes100
2C:C:g570 C:C:u571 24.435845.45YesYes100
3C:C:c504 C:C:c505 16.288426.64YesYes100
4C:C:g569 C:C:g570 18.632935.48YesYes100
5C:C:c505 C:C:c506 88.214732.96YesYes100
6C:C:g568 C:C:g569 13.311936.93YesYes100
7A:A:R163 C:C:c505 66.48677.63YesYes000
8C:C:a507 C:C:c506 93.983922.96YesYes100
9C:C:a507 C:C:u508 10011.1YesYes100
10C:C:c509 C:C:u508 56.76079.97YesYes100
11C:C:a546 C:C:u508 41.579112.8YesYes100
12C:C:c509 C:C:g510 15.408913.75YesYes100
13C:C:a545 C:C:c509 41.438623.39NoYes100
14C:C:a545 C:C:a546 43.678911.21NoYes100
15C:C:g510 C:C:g526 12.50627.24YesYes100
16C:C:c527 C:C:g526 13.302335.58NoYes100
17C:C:a544 C:C:a545 85.029429.23NoNo000
18C:C:c527 C:C:g528 13.192222.64NoYes100
19C:C:a544 C:C:g543 84.987430.08NoYes000
20C:C:g528 C:C:g543 25.186921.36YesYes100
21C:C:g528 C:C:g529 38.14828.96YesYes100
22C:C:c542 C:C:g543 59.757426.28YesYes100
23C:C:c542 C:C:g529 25.069913.34YesYes100
24C:C:c530 C:C:g529 62.859142.05NoYes100
25C:C:c541 C:C:c542 34.628332.96NoYes100
26C:C:c530 C:C:c531 62.501729.8NoYes100
27C:C:c531 C:C:g540 24.835612.53YesYes100
28C:C:c541 C:C:g540 34.550837.2NoYes100
29C:C:c531 C:C:c532 86.857533.87YesNo000
30C:C:c532 C:C:u533 86.41532.63NoNo000
31C:C:c534 C:C:u533 50.028611.78YesNo200
32C:C:u533 C:C:u535 35.9445.91NoYes200
33A:A:R435 C:C:c534 29.78636.24YesYes200
34A:A:R435 C:C:u535 29.581123.68YesYes200
35A:A:F448 C:C:c534 17.55037.65NoYes000
36C:C:a573 C:C:c572 28.755210.63YesYes100
37C:C:a573 C:C:c574 19.620314.46YesYes100
38A:A:V177 C:C:c574 13.487810.21NoYes000
39A:A:E69 A:A:R35 32.169812.79YesYes000
40A:A:E69 A:A:Y80 34.821211.22YesYes000
41A:A:M198 A:A:Y80 36.58627.18NoYes000
42A:A:M198 A:A:R39 37.02726.2NoYes000
43A:A:E41 A:A:R39 10.91495.82YesYes100
44A:A:I204 A:A:N25 10.795814.16NoNo000
45A:A:N25 A:A:T4 11.24410.24NoNo000
46A:A:F36 A:A:T4 12.14025.19NoNo000
47A:A:F36 A:A:Y26 17.05996.19NoYes000
48A:A:R30 A:A:Y26 27.285711.32YesYes1100
49A:A:D68 A:A:R30 29.513910.72NoYes000
50A:A:D68 A:A:R35 29.95694.76NoYes000
51A:A:R39 A:A:R5 21.14826.4YesYes100
52A:A:N191 A:A:R5 10.47016.03YesYes100
53A:A:D195 A:A:R39 10.394110.72YesYes100
54A:A:D195 A:A:N191 10.58618.08YesYes100
55A:A:R205 A:A:V203 10.61115.23YesNo000
56A:A:R205 A:A:Y187 25.4396.17YesYes100
57A:A:E41 A:A:Q82 11.68916.57YesYes100
58A:A:R147 A:A:V177 12.94987.85YesNo000
59A:A:D160 A:A:R163 66.274715.48NoYes000
60A:A:D160 A:A:H232 66.21386.3NoYes000
61A:A:H232 A:A:R205 65.367610.16YesYes000
62A:A:F365 A:A:L335 10.47096.09YesYes1700
63A:A:F373 A:A:L335 20.93186.09YesYes000
64A:A:F373 A:A:Y347 28.24585.16YesYes000
65A:A:L454 A:A:Y347 32.40135.86NoYes300
66A:A:L454 A:A:R458 44.937912.15NoNo300
67A:A:R458 A:A:R462 45.97225.33NoNo300
68A:A:R462 A:A:Y377 50.148715.43NoNo000
69A:A:Y371 A:A:Y377 58.46185.96YesNo000
70A:A:T444 A:A:Y371 60.53076.24YesYes200
71A:A:R435 A:A:T444 55.734610.35YesYes200
72A:A:L354 A:A:L453 10.46884.15NoNo000
73A:A:L453 A:A:L454 11.49415.54NoNo300
74A:A:L397 A:A:L416 16.1765.54NoNo000
75A:A:F448 A:A:L416 16.63593.65NoNo000
76A:A:R5 A:A:V203 10.88736.54YesNo000
77A:A:N191 A:A:R205 20.94064.82YesYes100
78A:A:E41 A:A:Y187 21.49567.86YesYes100

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Force: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      9 < rr ≤ 10

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Index Node1 Node2 Recurrency Force Hub1? Hub2? Community Value1 Value2

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Force: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Download PSN data

2D representation of the global metapath and histograms of path distribution according to several parameters:

2D representation of the user filetered metapath and histograms of path distribution according to several parameters:

Net Summary
Imin 4.82
Number of Linked Nodes 523
Number of Links 656
Number of Hubs 128
Number of Links mediated by Hubs 427
Number of Communities 18
Number of Nodes involved in Communities 162
Number of Links involved in Communities 255
Path Summary
Number Of Nodes in MetaPath 79
Number Of Links MetaPath 78
Number of Shortest Paths 1818952
Length Of Smallest Path 3
Average Path Length 31.9119
Length of Longest Path 52
Minimum Path Force 1.385
Average Path Force 15.8979
Maximum Path Force 40.465
Minimum Path Correlation 0.7
Average Path Correlation 0.976937
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.0303
Average % Of Corr. Nodes 33.1143
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 61.426
Maximum Path Hubs % 100
Filtered Path Summary
Number Of Nodes in MetaPath available after path filtering
Number Of Links MetaPath available after path filtering
Number of Shortest Paths available after path filtering
Length Of Smallest Path available after path filtering
Average Path Length available after path filtering
Length of Longest Path available after path filtering
Minimum Path Force available after path filtering
Average Path Force available after path filtering
Maximum Path Force available after path filtering
Minimum Path Correlation available after path filtering
Average Path Correlation available after path filtering
Maximum Path Correlation available after path filtering
Minimum % Of Corr. Nodes available after path filtering
Average % Of Corr. Nodes available after path filtering
Maximum % Of Corr. Nodes available after path filtering
Minimum Path Hubs % available after path filtering
Average Path Hubs % available after path filtering
Maximum Path Hubs % available after path filtering

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with all submitted structures, 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files). The zip bundle also contains an output manual explaining the meaning of all files and numerical data.

Download webpsn_output_jobbahzt0w7.zip