Color Average Interaction Strength
      0 < i.s. ≤ 1
      1 < i.s. ≤ 2
      2 < i.s. ≤ 3
      3 < i.s. ≤ 4
      4 < i.s. ≤ 5
      5 < i.s. ≤ 6
      6 < i.s. ≤ 7
      7 < i.s. ≤ 8
      8 < i.s. ≤ 9
      9 < i.s. ≤ 10
Index Hub Avg Force Num Of Links Community Value
1C:C:g502 20.7075410
2C:C:c503 23.0825410
3C:C:c504 15.542510
4C:C:c505 16.932510
5C:C:c506 17.965410
6C:C:a507 13.6275410
7C:C:u508 10.6163810
8C:C:c509 21.385400
9C:C:g510 15.84410
10C:C:u511 18.0725410
11C:C:c512 18.0525410
12C:C:u513 14.5483610
13C:C:a514 17.956510
14C:C:g515 13.738510
15C:C:g518 15.0617610
16C:C:g519 11.178500
17C:C:a521 19.068510
18C:C:g522 16.458510
19C:C:g523 20.44410
20C:C:a524 18.964510
21C:C:c525 19.714510
22C:C:g526 20.93410
23C:C:g528 19.7625410
24C:C:g529 22.7825410
25C:C:c531 20.57410
26C:C:c534 8.05625810
27C:C:u535 18.876510
28C:C:c536 22.4875410
29C:C:g540 21.99410
30C:C:c542 19.6725410
31C:C:g543 20.9575410
32C:C:a546 15.33710
33C:C:c548 14.2233610
34C:C:g549 13.81410
35C:C:g550 21.2925410
36C:C:g551 20.545410
37C:C:g552 21.0075410
38C:C:g553 22.1025400
39C:C:u555 17.9675410
40C:C:g557 20.016510
41C:C:a558 14.2717610
42C:C:u559 16.818510
43C:C:u560 15.024510
44C:C:c561 16.3325410
45C:C:c562 16.9825400
46C:C:c563 19.0225410
47C:C:c564 19.935410
48C:C:c565 20.525400
49C:C:u566 19.825400
50C:C:g567 22.2575410
51C:C:g568 22.475410
52C:C:g569 19.92500
53C:C:g570 24.04410
54C:C:u571 17.974510
55C:C:c572 14.0725410
56C:C:a573 10.205410
57C:C:c574 8.675610
58C:C:c575 14.43600
59C:C:a576 14.075610
60A:A:R5 8.0175410
61A:A:I6 7.7475410
62A:A:P14 5.734500
63A:A:Y20 8.075400
64A:A:Y26 7.764510
65A:A:W28 14.0675410
66A:A:R30 7.0925410
67A:A:R35 9.175410
68A:A:R39 8.4610
69A:A:E41 8.394510
70A:A:R47 10.53410
71A:A:Y67 7.99500
72A:A:E69 9.856510
73A:A:Y80 7.8575400
74A:A:Q82 9.688500
75A:A:R85 9.0825410
76A:A:Y89 8.78600
77A:A:Y92 6.808510
78A:A:W101 6.0175410
79A:A:Y103 8.965410
80A:A:R104 8.148510
81A:A:F106 11.625410
82A:A:E107 8.426510
83A:A:Y122 11.8425410
84A:A:R125 9.44510
85A:A:R127 10.485410
86A:A:R147 10.46410
87A:A:T156 5.2375400
88A:A:R163 10.8175410
89A:A:Y168 8.05510
90A:A:L179 4.365400
91A:A:D182 9.4075420
92A:A:Y187 14.678520
93A:A:N191 9.968520
94A:A:D194 11.9775420
95A:A:D195 11.6275420
96A:A:D202 9.794500
97A:A:R205 8.4620
98A:A:W209 14.874500
99A:A:H216 7.705420
100A:A:Y231 11.9333620
101A:A:H232 8.0575420
102A:A:N238 7.39833620
103A:A:T251 6.1425420
104A:A:Y256 6.3325400
105A:A:F261 6.815400
106A:A:N268 8.75520
107A:A:Y269 8.26400
108A:A:F289 7.9725400
109A:A:W295 13.8717610
110A:A:K309 6.6575410
111A:A:L310 7.0475410
112A:A:K332 9.09410
113A:A:F334 5.3875400
114A:A:L335 6.27400
115A:A:Y347 6.57510
116A:A:R358 8.815410
117A:A:F365 6.66167610
118A:A:R370 4.3675410
119A:A:Y371 7.9275410
120A:A:F373 5.68410
121A:A:E375 11.6275410
122A:A:Y398 7.366510
123A:A:R417 6.615410
124A:A:F419 7.4925410
125A:A:Q432 6.895410
126A:A:R435 10.642510
127A:A:T444 7.465410
128A:A:?600 7.411010

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Force: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

Value: this column reports the value present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      90 < rr ≤ 100
Index Node1 Node2 Recurrency Force Hub1? Hub2? Community Value1 Value2
1C:C:c572 C:C:u571 21.146830.52YesYes100
2C:C:g570 C:C:u571 22.356445.01YesYes100
3C:C:c504 C:C:c505 15.410726.39YesYes100
4C:C:g569 C:C:g570 17.088135.13YesYes100
5C:C:c505 C:C:c506 89.254932.65YesYes100
6C:C:g568 C:C:g569 12.311936.56YesYes100
7A:A:R163 C:C:c505 68.94187.6YesYes000
8C:C:a507 C:C:c506 94.49922.79YesYes100
9C:C:a507 C:C:u508 10011.01YesYes100
10C:C:c509 C:C:u508 56.78919.88YesYes100
11C:C:a546 C:C:u508 41.596312.71YesYes100
12C:C:c509 C:C:g510 15.424113.61YesYes100
13C:C:a545 C:C:c509 41.457523.22NoYes100
14C:C:a545 C:C:a546 43.775411.15NoYes100
15C:C:g510 C:C:g526 12.51667.17YesYes100
16C:C:c527 C:C:g526 13.344635.23NoYes100
17C:C:a544 C:C:a545 85.146229.08NoNo000
18C:C:c527 C:C:g528 13.232722.42NoYes100
19C:C:a544 C:C:g543 85.107229.85NoYes000
20C:C:g528 C:C:g543 25.221821.15YesYes100
21C:C:g528 C:C:g529 38.221728.67YesYes100
22C:C:c542 C:C:g543 59.845226.02YesYes100
23C:C:c542 C:C:g529 25.105113.21YesYes100
24C:C:c530 C:C:g529 62.966141.64NoYes100
25C:C:c541 C:C:c542 34.683332.65NoYes100
26C:C:c530 C:C:c531 62.606929.52NoYes100
27C:C:c531 C:C:g540 24.871212.41YesYes100
28C:C:c541 C:C:g540 34.607536.84NoYes100
29C:C:c531 C:C:c532 86.996533.54YesNo000
30C:C:c532 C:C:u533 86.553632.32NoNo000
31C:C:c534 C:C:u533 50.110411.67YesNo200
32C:C:u533 C:C:u535 36.00055.86NoYes200
33A:A:R435 C:C:c534 29.83856.21YesYes200
34A:A:R435 C:C:u535 29.62623.57YesYes200
35A:A:F448 C:C:c534 17.59227.62NoYes000
36C:C:a573 C:C:c572 26.073510.55YesYes100
37C:C:a573 C:C:c574 16.603314.35YesYes100
38A:A:V177 C:C:c574 13.987410.16NoYes000
39A:A:E69 A:A:R35 33.361312.79YesYes000
40A:A:E69 A:A:Y80 36.110811.22YesYes000
41A:A:M198 A:A:Y80 37.94127.18NoYes000
42A:A:M198 A:A:R39 38.39856.2NoYes000
43A:A:E41 A:A:R39 11.31915.82YesYes100
44A:A:I204 A:A:N25 11.195614.16NoNo000
45A:A:N25 A:A:T4 11.660510.24NoNo000
46A:A:F36 A:A:T4 12.58985.19NoNo000
47A:A:F36 A:A:Y26 17.69176.19NoYes000
48A:A:R30 A:A:Y26 28.296311.32YesYes1100
49A:A:D68 A:A:R30 30.60710.72NoYes000
50A:A:D68 A:A:R35 31.06644.76NoYes000
51A:A:R39 A:A:R5 21.93146.4YesYes100
52A:A:N191 A:A:R5 10.85796.03YesYes100
53A:A:D195 A:A:R39 10.778110.72YesYes100
54A:A:D195 A:A:N191 10.97718.08YesYes100
55A:A:R205 A:A:V203 11.00415.23YesNo000
56A:A:R205 A:A:Y187 26.37816.17YesYes100
57A:A:E41 A:A:Q82 12.121916.57YesYes100
58A:A:R147 A:A:V177 13.42947.85YesNo000
59A:A:D160 A:A:R163 68.72215.48NoYes000
60A:A:D160 A:A:H232 68.65886.3NoYes000
61A:A:H232 A:A:R205 67.782310.16YesYes000
62A:A:F365 A:A:L335 10.4936.09YesYes1800
63A:A:F373 A:A:L335 20.97556.09YesYes000
64A:A:F373 A:A:Y347 28.30435.16YesYes000
65A:A:L454 A:A:Y347 32.46745.86NoYes300
66A:A:L454 A:A:R458 45.029312.15NoNo300
67A:A:R458 A:A:R462 46.06535.33NoNo300
68A:A:R462 A:A:Y377 50.250215.43NoNo000
69A:A:Y371 A:A:Y377 58.57865.96YesNo000
70A:A:T444 A:A:Y371 60.62976.24YesYes200
71A:A:R435 A:A:T444 55.825310.35YesYes200
72A:A:L354 A:A:L453 10.49074.15NoNo000
73A:A:L453 A:A:L454 11.51735.54NoNo300
74A:A:L397 A:A:L416 16.2155.54NoNo000
75A:A:F448 A:A:L416 16.67593.65NoNo000
76A:A:R5 A:A:V203 11.29056.54YesNo000
77A:A:N191 A:A:R205 21.71414.82YesYes100
78A:A:E41 A:A:Y187 22.29077.86YesYes100

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Force: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      9 < rr ≤ 10

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Index Node1 Node2 Recurrency Force Hub1? Hub2? Community Value1 Value2

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Force: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Download PSN data

2D representation of the global metapath and histograms of path distribution according to several parameters:

2D representation of the user filetered metapath and histograms of path distribution according to several parameters:

Net Summary
Imin 4.82
Number of Linked Nodes 523
Number of Links 655
Number of Hubs 128
Number of Links mediated by Hubs 426
Number of Communities 19
Number of Nodes involved in Communities 161
Number of Links involved in Communities 252
Path Summary
Number Of Nodes in MetaPath 79
Number Of Links MetaPath 78
Number of Shortest Paths 1761258
Length Of Smallest Path 3
Average Path Length 31.9555
Length of Longest Path 52
Minimum Path Force 1.385
Average Path Force 15.7022
Maximum Path Force 40.07
Minimum Path Correlation 0.7
Average Path Correlation 0.976765
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.0303
Average % Of Corr. Nodes 33.4079
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 61.3142
Maximum Path Hubs % 100
Filtered Path Summary
Number Of Nodes in MetaPath available after path filtering
Number Of Links MetaPath available after path filtering
Number of Shortest Paths available after path filtering
Length Of Smallest Path available after path filtering
Average Path Length available after path filtering
Length of Longest Path available after path filtering
Minimum Path Force available after path filtering
Average Path Force available after path filtering
Maximum Path Force available after path filtering
Minimum Path Correlation available after path filtering
Average Path Correlation available after path filtering
Maximum Path Correlation available after path filtering
Minimum % Of Corr. Nodes available after path filtering
Average % Of Corr. Nodes available after path filtering
Maximum % Of Corr. Nodes available after path filtering
Minimum Path Hubs % available after path filtering
Average Path Hubs % available after path filtering
Maximum Path Hubs % available after path filtering

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with all submitted structures, 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files). The zip bundle also contains an output manual explaining the meaning of all files and numerical data.

Download webpsn_output_jobqxnOJ7.zip