Color Trajectory Frequency
      0 < Freq. ≤ 10
      10 < Freq. ≤ 20
      20 < Freq. ≤ 30
      30 < Freq. ≤ 40
      40 < Freq. ≤ 50
      50 < Freq. ≤ 60
      60 < Freq. ≤ 70
      70 < Freq. ≤ 80
      80 < Freq. ≤ 90
      90 < Freq. ≤ 100
Index Hub Freq Num Of Links Community Value
1A:A:F7 74.55400
2A:A:K13 67.61400
3A:A:G25 56.42300
4A:A:V30 69.27300
5A:A:R31 50.53400
6A:A:G33 60.92400
7A:A:Y36 83.12500
8A:A:P42 82.67400
9A:A:E47 52.87400
10A:A:H53 50400
11A:A:D56 70.53430
12A:A:R57 84430
13A:A:V61 97.36430
14A:A:K91 96.44530
15A:A:V9 30.39400
16A:A:L11 32.68400
17A:A:G34 28.01500
18A:A:I35 38.69500
19A:A:A39 6.74400
20A:A:I41 21.83400
21A:A:A46 31.72450
22A:A:D49 33.1400
23A:A:A60 7.47400
24A:A:A69 16.91400
25A:A:E76 38.9400
26A:A:H86 49.8400

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Freq: the trajectory frequency of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

Value: this column reports the value present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      90 < rr ≤ 100
Index Node1 Node2 Recurrency Freq Hub1? Hub2? Community Value1 Value2
1A:A:K2 A:A:P3 28.3514100NoNo000
2A:A:K91 A:A:P3 46.195775.56YesNo000
3A:A:D5 A:A:I6 21.467499.89NoNo000
4A:A:F7 A:A:I6 34.510997.25YesNo000
5A:A:F7 A:A:K91 63.496478.42YesYes000
6A:A:E8 A:A:F7 57.33767.53NoYes000
7A:A:F7 A:A:L89 30.253699.98YesNo000
8A:A:E8 A:A:V9 31.884199.86NoYes300
9A:A:E8 A:A:H86 26.449387.6NoYes300
10A:A:L87 A:A:V9 53.623283.67NoYes300
11A:A:H86 A:A:L87 36.684899.93YesNo300
12A:A:E10 A:A:V9 83.423911.1NoYes000
13A:A:E10 A:A:L11 81.793596.75NoYes000
14A:A:A12 A:A:K13 85.41670NoYes000
15A:A:A12 A:A:L11 92.11963.3NoYes000
16A:A:K13 A:A:Q83 44.746440.01YesNo000
17A:A:Q83 A:A:V84 47.644992.1NoNo000
18A:A:V84 A:A:V85 49.9094100NoNo000
19A:A:H86 A:A:V85 57.33777.98YesNo000
20A:A:K13 A:A:N14 49.365955.92YesNo000
21A:A:K13 A:A:T81 81.793598.37YesNo000
22A:A:D15 A:A:N14 33.0616100NoNo000
23A:A:L11 A:A:L18 42.39139.05YesNo000
24A:A:A39 A:A:K38 44.38410YesNo000
25A:A:K38 A:A:V37 47.463898.26NoNo000
26A:A:G55 A:A:V37 62.04710NoNo000
27A:A:D56 A:A:G55 46.01450.16YesNo000
28A:A:D56 A:A:K91 38.224694.54YesYes400
29A:A:A39 A:A:S21 25.09060YesNo500
30A:A:V37 A:A:Y36 77.9891100NoYes000
31A:A:T23 A:A:Y36 50.996427.05NoYes000
32A:A:T23 A:A:V22 52.808100NoNo000
33A:A:E90 A:A:K91 53.260999.99NoYes000
34A:A:E90 A:A:R57 49.909459.56NoYes000
35A:A:G34 A:A:R57 67.572516.54YesYes100
36A:A:G34 A:A:Y36 34.873217.83YesYes100
37A:A:H71 A:A:V22 51.08756.64NoNo000
38A:A:H71 A:A:T70 45.742899.99NoNo000
39A:A:A69 A:A:T70 48.46010.03YesNo000
40A:A:A69 A:A:I35 57.15580YesYes100
41A:A:I35 A:A:V58 61.594289.13YesNo100
42A:A:A69 A:A:V26 31.15940YesNo000
43A:A:N27 A:A:V26 22.554383.22NoNo000
44A:A:G33 A:A:G34 22.73550YesYes100
45A:A:S29 A:A:V30 20.1993100NoYes000
46A:A:R31 A:A:Y36 33.786253.53YesYes100
47A:A:I41 A:A:V40 55.3442100YesNo000
48A:A:A39 A:A:V40 58.152212.2YesNo000
49A:A:I52 A:A:L89 41.938457.65NoNo000
50A:A:I52 A:A:R51 71.2862100NoNo000
51A:A:D49 A:A:R51 65.3986100YesNo000
52A:A:D49 A:A:S48 29.076186.98YesNo000
53A:A:E47 A:A:S48 22.373297.18YesNo000
54A:A:E47 A:A:P42 40.126889.55YesYes200
55A:A:D56 A:A:H53 32.065274.84YesYes000
56A:A:H53 A:A:I52 55.978367.55YesNo000
57A:A:A46 A:A:D49 23.73190.2YesYes200
58A:A:A46 A:A:E47 22.28260YesYes200
59A:A:I41 A:A:P42 32.0652100YesYes200
60A:A:H53 A:A:K54 27.4457100YesNo000
61A:A:G55 A:A:K54 25.90580.09NoNo000
62A:A:L59 A:A:R57 46.376876.83NoYes100
63A:A:L88 A:A:L89 38.858799.96NoNo000
64A:A:A60 A:A:L88 39.76450.04YesNo000
65A:A:A60 A:A:V61 96.28620.09YesYes000
66A:A:A60 A:A:L59 1000YesNo000
67A:A:V61 A:A:V64 62.862399.71YesNo000
68A:A:S65 A:A:V64 55.3442100NoNo000
69A:A:L66 A:A:S65 41.757291.58NoNo000
70A:A:E67 A:A:L66 27.989191.3NoNo000
71A:A:H71 A:A:K72 77.717499.74NoNo000
72A:A:K72 A:A:Q73 69.384199.72NoNo000
73A:A:E76 A:A:N80 49.184854.99YesNo700
74A:A:N80 A:A:T81 73.0978100NoNo000
75A:A:E76 A:A:V75 28.8949100YesNo000
76A:A:A74 A:A:Q73 63.31520NoNo000
77A:A:A74 A:A:V75 28.71381.51NoNo000
78A:A:E76 A:A:T77 27.7174100YesNo000
79A:A:A74 A:A:T77 31.61230.94NoNo000
80A:A:G19 A:A:L18 38.31520NoNo000
81A:A:A45 A:A:L11 48.18840NoYes000
82A:A:G19 A:A:I41 35.68841.38NoYes000
83A:A:A60 A:A:L87 88.22460YesNo000
84A:A:L59 A:A:V58 51.811699.84NoNo100
85A:A:A45 A:A:S48 22.1920NoNo000
86A:A:A45 A:A:A46 26.44930NoYes000
87A:A:I35 A:A:Y36 33.6957100YesYes100
88A:A:S21 A:A:V22 33.5145100NoNo000

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Freq: the trajectory frequency of this link.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      9 < rr ≤ 10

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Index Node1 Node2 Recurrency Freq Hub1? Hub2? Community Value1 Value2

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Freq: the trajectory frequency of this link.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Download PSN data

Trj Stats Plots:

Stat 1 Stat 2 Documentation

2D representation of the global metapath and histograms of path distribution according to several parameters:

2D representation of the user filetered metapath and histograms of path distribution according to several parameters:

Net Summary
Imin 4.56612
Number of Linked Nodes 94
Number of Links 130
Number of Hubs 26
Number of Links mediated by Hubs 85
Number of Communities 7
Number of Nodes involved in Communities 36
Number of Links involved in Communities 47
Path Summary
Number Of Nodes in MetaPath 89
Number Of Links MetaPath 88
Number of Shortest Paths 6419
Length Of Smallest Path 3
Average Path Length 8.8774
Length of Longest Path 17
Minimum Path Force 1.73
Average Path Force 5.30654
Maximum Path Force 10.685
Minimum Path Correlation 0.805
Average Path Correlation 0.887529
Maximum Path Correlation 0.943
Minimum % Of Corr. Nodes 7.14286
Average % Of Corr. Nodes 27.079
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.6613
Maximum Path Hubs % 100
Filtered Path Summary
Number Of Nodes in MetaPath 89
Number Of Links MetaPath 88
Number of Shortest Paths 171
Length Of Smallest Path 3
Average Path Length 9.5614
Length of Longest Path 14
Minimum Path Force 4.7575
Average Path Force 6.31267
Maximum Path Force 8.685
Minimum Path Correlation 0.913
Average Path Correlation 0.914578
Maximum Path Correlation 0.943
Minimum % Of Corr. Nodes 8.33333
Average % Of Corr. Nodes 25.2346
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.2057
Maximum Path Hubs % 63.6364

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with all submitted structures, 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files). The zip bundle also contains an output manual explaining the meaning of all files and numerical data.

Download webpsn_output_jobtut2sn.zip