| Step |
Description |
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| 1 |
Click on Trj Submit in the vertical menu on the left and then on PSN Difference link on the right |
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| 2 |
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In this case example, structural differences related to second PDZ domain from human PTP1E activation will be inferred by computing the PSN difference between the molecular dynamics simulations of the crystal structures of the inactive (PDB: 3LNX) and active (PDB: 3LNY) states.
- Download the two .psn files 3LNX and 3LNY used in this example and upload them
- Select Proteins option
- Click on Submit
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| 3 |
- Select 3lnx as reference structure
- Select "Do not apply labels" option
- Click on Submit at the bottom of the page
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